If I shut the program down before it has finished processing a candidate, will I lose data?

Yes, any work done on a currently-crunching WU is lost if the client is stopped for any reason (including using the Suspend command) before all candidates in a conformer are completed. The WU will restart back at the beginning in those cases, so if you must stop the program, it's best to try and quit the client while the conformer count is still low.

If I shut down after the conformer is finished, but it hasn't uploaded, will I lose the work?

No, the work will be stored in a cache until the next time internet access is available.

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by KeysCapt