Yes, that is hooked up...as Azinator said, we even tried it out of the case...all standoffs have been removed and replaced multiple times, in two different, known good cases...thanks for the tips though...I know standoffs can be a real bitch...
Could it be possible that during the transfer of the Mobo, that there was a momentary Short between the Mobo and the case/Standoffs that caused corruption of the CMOS?
Try Clearing out the CMOS settings with the Motherboard's CCLEAR Jumper, or by removing the CMOS Battery for 15-20 Minutes or so, and see if that brings it back to life...